PANM DB ver 5.0 : An update of the PANM database for invertebrate NGS data analysis
Jun Yang Jeong, Jie Eun Park, Dae Kwon Song, Chan-Eui Hong, Yong Tae Kim, Hyeonjun Shin, Ziwei Liu, Min Kyu Sang, Hongray Howrelia Patnaik, Bharat Bhusan Patmaik, Se Won Kang, So Young Park, Jun Sang Lee,Yeon Soo Han, Hong Seog Park and Yong Seok Lee
Department of Biology, College of Natural Sciences, Soonchunhyang University, Asan, Chungnam 31538, Korea, Korea Native Animal Resources Utilization Convergence Research Institute Research Support Center(Core-Facility) for Bio-Bigdata Analysis and Utili
The PANM database (Protostome DB) is a public database platform established in 2015 for the efficient annotation of next-generation sequencing (NGS) data arising from genome sequencing projects involving the Invertebrates (include Arthropoda, Mollusca, and Nematoda). The database has been updated on a routine basis to further increase the accuracy and speed of NGS data annotation. In PANM DB version 5.0 release a total of 21,276,123 protein sequences belonging to the Protostomes have been made available (registered sequences of NCBI). The PANM DB version 5.0 contains about 4% of the total NCBI-nr data shortening the time for overall annotation of large-scale NGS data of the Protostomes. PANM DB version 5.0 can be downloaded for free from for annotation based on local BLAST analysis.
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